Posts

Paper is out at Information: "SOCRAT: A Dynamic Web Toolbox for Interactive Data Processing, Analysis and Visualization"
In this paper, we present the Statistics Online Computational Resource Analytical Toolbox (SOCRAT), a dynamic, flexible, and extensible …
Nov 19, 2022 1 min read
New preprint: "Integrating inflammatory biomarker analysis and artificial intelligence-enabled image-based profiling to identify drug targets for intestinal fibrosis"
We applied Cell Painting, a scalable image-based morphology assay, augmented with machine learning algorithms to identify small …
Jun 10, 2022 1 min read
Paper is out at PLoS Comp Bio: "Ten quick tips for deep learning in biology"
We aimed to improve the overall usage and reporting quality of deep learning in the literature and to enable increasing numbers of …
Mar 24, 2022 1 min read
Paper is out at Computers in Biology and Medicine: "3D convolutional neural networks for stalled brain capillary detection"
We proposed a deep learning-based approach for automatic detection of stalled capillaries in brain images based on 3D convolutional …
Feb 1, 2022 1 min read
Paper is out at MBoC: "Valproic acid-induced changes of 4D nuclear morphology in astrocyte cells"
We used shape modeling to quantify temporal dynamics of 3D nuclear morphology in VPA-treated astrocytes.
Aug 19, 2021 1 min read
New preprint "Ten Quick Tips for Deep Learning in Biology"
We provide some suggestions to keep in mind as you embark on a biological deep learning application.
May 21, 2021 1 min read
New preprint "3D Convolutional Neural Networks for Stalled Brain Capillary Detection"
We demonsrate how 3D CNNs can be effectively used to detect stalled capillaries in microscopic brain images.
Apr 4, 2021 1 min read
Special Issue "Deep Learning for Computer-Aided Diagnosis in Biomedical Imaging"
I’m serving as a Guest Editor for the Special Issue of Diagnostics that is soliciting submissions
Aug 25, 2020 1 min read
New preprint "Valproic Acid-Induced Changes of 4D Nuclear Morphology in Astrocyte Cells"
We used shape modeling to quantify temporal dynamics of 3D nuclear morphology in VPA-treated astrocytes
Jun 29, 2020 1 min read
New CVPRW'20 paper "Deep Learning for Automatic Pneumonia Detection"
We described deep learning-based approach to pneumonia detection in chest radiographs
Jun 14, 2020 1 min read